PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00011517-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 92aa    MW: 10424.7 Da    PI: 8.5255
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00011517-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.5e-1020601454
                        HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        d+iN+  ++L++llP+ +   +s K+s a +L+++++YI+sL
  WALNUT_00011517-RA 20 DQINDLVSKLQQLLPEiR-ERRSDKVSAANVLQETCNYIRSL 60
                        79**************77.99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.277660IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-102077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-72060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-92074IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRSRQ SGGSRPITDD QINDLVSKLQ QLLPEIRERR SDKVSAANVL QETCNYIRSL  60
HREVDDLSER LSGLLESSDT AQAAIIRNLL MQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495641.11e-45PREDICTED: transcription factor ILI6
SwissprotF4JCN93e-38PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0L9VNK95e-46A0A0L9VNK9_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RGB35e-46A0A0S3RGB3_PHAAN; Uncharacterized protein
STRINGGLYMA04G34080.15e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56734143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.15e-27activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1